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FiberDock is an efficient method for flexible refinement and re-scoring of rigid-body protein-protein docking solutions.
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Option 1 (use transformation file) |
| (Example: Receptor Molecule: 1ukr:A, Ligand Molecule: 1t6g:B, Transformations File:1t6g_trans.txt) |
| Receptor Molecule: |
(PDB:chainId e.g. 1ukr:A) |
or |
upload file: |
| Refine receptor's backbone conformation?
Yes
No |
| Ligand Molecule: |
(PDB:chainId e.g. 1t6g:B) |
or |
upload file: |
| Refine ligand's backbone conformation?
Yes
No |
| Rigid Docking Solutions: |
File format: | PatchDock transformations file
ZDOCK output file |
upload file:
(up to 100 solutions)
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* If no file is uploaded a zero-transformation will be used.
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Option 2 (use models file) |
| (Example: Models File:models_example.ent, Receptor chain: E, Ligand chain: I)
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| Models file: |
Receptor chain:
Ligand chain: (up to 100 models)
the backbone conformation of the proteins must be the same in all the models! |
| Refine receptor's backbone conformation?
Yes
No |
| Refine ligand's backbone conformation?
Yes
No
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| Your e-mail address: |
(optional)
A link to the results page will be sent to this address when FiberDock will finish running. |
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