Type PDB code of two proteins to compare
(on the next page you will be able to choose a protein chain if available)
First Protein:  (1ggg)
Second Protein:  (1hpb)
Maximal RMSD between matched fragments
Minimal size of matched fragments (Num. of Amino Acids)
 


FlexProt Download (for Linux OS only) Flexible Protein Structure Alignment

What is FlexProt? :

FlexProt detects the optimal flexible structural alignment of a pair of protein structures. The first structure is assumed to be rigid, while in the second structure potential flexible regions are automatically detected.
Reference:
"Flexible protein alignment and hinge detection", M. Shatsky, H.J. Wolfson, and R. Nussinov, Proteins: Structure, Function, and Genetics 48:242-256, 2002.


For comments : max.shatsky@gmail.com