*Channel Type:
[Chamber]
[Transmembrane]
*PDB:
(PDB:chainId e.g. 1AKD:A)
or
upload file:
e-mail address:
(Optional: link to the results page is sent to this address)
*Via sphere:
x:
y:
z:
r:
(Find channel that passes through this sphere)
*Channel vector:
x:
y:
z:
(General direction of channel)
Advanced options: [
Show
] [
Hide
]
Resolution:
(between 0.1A and 0.5A)
Bounding sphere radius:
End channels at radius:
Include hetatoms:
(Include these hetatoms, e.g. HEM)
Include hydrogens:
No
Yes
Mesh quality:
Normal
High
(For visualization purposes)
Radii table:
(Use as a template a radii table for
Linux
or
Windows
)
Probe radius:
(between 0.0A and 10.0A)
Reference: Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Ruth Nussinov, Dan Halperin.
"MolAxis: A server for Identification of Channels in Macromolecule"
. Nucleic Acids Research. Volume 36 (Web Server issue), 1 July 2008, Pages: W210-W215. [
link
].