People
From BioInfo3D Group
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= Current Graduate Students = | = Current Graduate Students = | ||
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| + | |- | ||
| + | ! Name | ||
| + | ! Dept/University | ||
| + | ! Start Year | ||
| + | ! email | ||
| + | |- | ||
| + | | Jerome Tubiana | ||
| + | | CS,TAU | ||
| + | | 2019 | ||
| + | | jertubiana@gmail.com | ||
| + | |} | ||
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== Doctoral Students == | == Doctoral Students == | ||
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|2011 | |2011 | ||
|bojemoi@gmail.com | |bojemoi@gmail.com | ||
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! Period | ! Period | ||
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|Ephraim (Efi) Cohen | |Ephraim (Efi) Cohen | ||
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|1993-1995 | |1993-1995 | ||
|D. Cohen, CS, BGU | |D. Cohen, CS, BGU | ||
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|Vladimir Alesker | |Vladimir Alesker | ||
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|2006-2010 | |2006-2010 | ||
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| + | |- | ||
| + | |Elad Donsky | ||
| + | |CS,TAU | ||
| + | | | ||
| + | |2007 | ||
| + | | | ||
| + | |- | ||
| + | |Aviyah Peri | ||
| + | |CS,TAU | ||
| + | | | ||
| + | |2008 | ||
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| + | |- | ||
|- | |- | ||
|Itamar Banitt | |Itamar Banitt | ||
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|2009-2010 | |2009-2010 | ||
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| + | |- | ||
| + | |Daniel Zaidman | ||
| + | |CS,TAU | ||
| + | |Design of peptides that inhibit protein-protein interactions | ||
| + | |2011-2016 | ||
| + | | | ||
| + | |- | ||
| + | |Naama Amir | ||
| + | |CS,TAU | ||
| + | |Modeling of large multi-molecular assemblies | ||
| + | |2013-2015 | ||
| + | | | ||
| + | |- | ||
| + | |Misha Zabejansky | ||
| + | |CS,TAU | ||
| + | | | ||
| + | |2014-2017 | ||
| + | | | ||
| + | |- | ||
| + | |Maria Gorodetski | ||
| + | |CS,TAU | ||
| + | |Knowledge Based Design of Protein Binding Peptides | ||
| + | |2016-2019 | ||
| + | | | ||
| + | |- | ||
|} | |} | ||
Latest revision as of 08:33, 31 March 2019
Contents |
Head of the BioInfo3D Group
Prof. Haim J. Wolfson, School of Computer Science, TAU.
Research Staff
| Name | Dept/University | |
|---|---|---|
| Dr. Naama Hurwitz | CS,TAU | namih99@gmail.com |
Current Graduate Students
Postdoctoral Students
| Name | Dept/University | Start Year | |
|---|---|---|---|
| Jerome Tubiana | CS,TAU | 2019 | jertubiana@gmail.com |
Doctoral Students
| Name | Dept/University | Start Year | |
|---|---|---|---|
| Mark Rozanov | CS,TAU | 2016 | marik.s79@gmail.com |
Masters Students
| Name | Dept/University | Start Year | |
|---|---|---|---|
| Dan Cohen | CS,TAU | 2011 | bojemoi@gmail.com |
Former Graduate Students
Doctoral Students
| Name | Dept/University | Thesis Title | Period | Co-supervisor |
|---|---|---|---|---|
| Yehezkel Lamdan | CS,NYU | Geometric Hashing | 1987-1989 | J.T. Schwartz |
| Daniel Fischer | CS,TAU | Structural Matching Algorithms in Molecular Biology | 1991-1994 | R. Nussinov |
| Raquel Norel | CS,TAU | Algorithms for Protein Docking | 1992-1997 | R. Nussinov |
| Bilha (Billie) Sandak | CS,TAU | A Method for Biomolecular Structural Recognition allowing Conformational Flexibility | 1992-1997 | R. Nussinov |
| Konstantin Kupeev | CS,TAU | A Structural Method for Shape Recognition | 1993-1997 | V. Brailovsky |
| Hadar Benyamini | HumGen, MedFac,TAU | Applying Novel Geometric Algorithms in the Search for Amyloidogenic Mechanisms | 1999-2004 | R. Nussinov, MedFac |
| Inbal Halperin - Landsberg | HumGen, MedFac,TAU | Improved Docking Schemes Utilizing Biological Information | 2001-2005 | R. Nussinov, MedFac |
| Maxim Shatsky | CS,TAU | The Common Point Set Problem with Applications to Protein Structure Analysis | 2001-2006 | |
| Nurit Haspel | CS,TAU | Computational modeling and prediction of self assembling beta-sheet rich protein structures | 2001-2006 | R. Nussinov |
| Yuval Inbar | CS,TAU | Structure Prediction of Multimolecular Protein Complexes | 2003-2007 | |
| Dina Schneidman-Duhovny | CS,TAU | Algorithms for Prediction of Molecular Interactions | 2003-2008 | |
| Oranit Dror | CS,TAU | Algorithms for Molecular Structure Analysis | 2004-2009 | |
| Alexandra Shulman-Peleg | CS,TAU | Algorithms for the Detection and Prediction of 3D Protein Binding Patterns and Interactions | 2004-2009 | |
| Dan Fishelovitch | Human Genetics, MedFac, TAU | In Silico prediction of the recognition between small molecules (ligands) and proteins for improved docking and drug design | 2004-2009 | Ruth Nussinov,MedFac, TAU |
| Idit Buch | Human Genetics, MedFac, TAU | In Silico Design, Construction & Validation of Protein Nanostructures | 2006-2011 | Ruth Nussinov, MedFac, TAU |
| Ilona Kifer | CS,TAU | Hierarchical-based Algorithms for Protein Structure Prediction | 2005-2011 | |
| Efrat Mashiach | CS,TAU | Flexible Molecular Docking | 2008-2013 | |
| Keren Lasker | TAU | Structure Determination of Macromolecular Assemblies by Data Integration | 2008-2012 |
Masters Students
| Name | Dept/University | Thesis Title | Period | Co-supervisor |
|---|---|---|---|---|
| Ephraim (Efi) Cohen | CS,BGU | Partial Matching of 3-D Objects in CAD/CAM Systems | 1993-1995 | D. Cohen, CS, BGU |
| Vladimir Alesker | CS,TAU | Rapid Macromolecule Comparison by Geometric Secondary Structure Matching | 1993-1995 | |
| Dan Shappir | CS,TAU | Mapping of NMR interproton distance onto crystallographically determined protein structures by Computer Vision techniques | 1992-1996 | |
| Michael Kolko | CS,TAU | Recognition of Articulated 3D Objects from 2D Images | 1993-1996 | |
| Georgy Verbitsky | CS,TAU | Structural Comparison of Flexible Protein Domains | 1994-1996 | |
| Einat Azarya-Sprinzak | HumGen, MedFac,TAU | Mutations of Spatially Neighboring Residues in Structurally Conserved Environments | 1994-1996 | R. Nussinov, |
| Maria Roiterstein-Rosen | CS,TAU | Protein Molecule Surface Comparison by Computer Vision Techniques | 1994-1997 | |
| Nathaniel Leibovitz | CS,NYU | Multiple Structural Alignment of Protein Ensembles | 1997-1999 | |
| Maxim Shatsky | CS,TAU | Flexible Alignment of Protein Molecules | 1999-2001 | |
| Tal Elkayam | HumGen, MedFac,TAU | Computational Studies of Protein Binding Sites | 1998-2001 | R. Nussinov |
| Nurit Haspel | HumGen, MedFac,TAU | A Computational Study of Protein Folding Pathways | 1999-2002 | R. Nussinov |
| Mark Sadov | CS,TAU | Flexible Matching of Drug Molecules | 1996-2002 | |
| Dina Schneidman-Duhovny | CS,TAU | PatchDock: A Method for Binding Site Detection and Unbound Docking of Rigid Molecules | 2000-2003 | |
| Adi Barzilay | HumGen, MedFac,TAU | Detection and Analysis of Folding-Function Inter-relationship in Proteins | 2000-2003 | R. Nussinov, MedFac |
| Vladimir Polyak | CS,TAU | BUDDA: Backbone Unbound Docking Application | 2000-2003 | |
| Oranit Shem-Tov (Dror) | CS,TAU | MASS: A Method for Multiple Structural Alignment by Secondary Structures | 2000-2003 | |
| Yuval Inbar | CS,TAU | Prediction of Protein Structure by Combinatorial Docking | 2001-2003 | |
| Alexandra Shulman-Peleg | CS,TAU | Site-Engine: Functional Sites Structural Search Engine | 2002-2004 | |
| Assaf Oron | HumGen, MedFac,TAU | Predicting Electrostatic Steering and Encounter Complexes in Protein-Protein Association Processes | 2002-2004 | Nussinov, MedFac; N. Ben Tal, Life Sc. |
| Shira Mintz | HumGen, MedFac,TAU | Computational Studies of Protein Binding Sites | 2003-2005 | R. Nussinov |
| Gilad Weinreb | HumGen, MedFac,TAU | Templating the Building Blocks and a Secondary-Structure Guided superimposition tool | 2003-2005 | R. Nussinov |
| Zipora Fligelman (Shaqed) | CS,TAU | FLEX MOL: A sequence Order Independent Algorithm for Matching Flexible Molecules by Geometric Hashing | 1999-2005 | |
| Keren Lasker | CS,TAU | EMatch: A Method for the Discovery of Protein Substructures in EM Maps | 2003-2005 | |
| Nelly Bluvshtein-Andrusier | CS,TAU | FireDock: Fast Interaction REfinement in Molecular Docking | 2003-2006 | R. Nussinov |
| Ido Shapira | CS,TAU | SiteLight 2: An improved method for protein binding site prediction using phage display libraries | 2003-2006 | |
| Aviad Tsherniak | CS,TAU | ComaLoop: A Method for Protein Loop Modeling Using Contact Maps Similarity | 2004-2006 | |
| Efrat Mashiach | CS,TAU | (transferred to direct Ph.D. track) | 2006-2008 | |
| Mira Abraham-Cohen | CS,TAU | DARTS: DAtabase of RNA Tertiary Structure and HARP: geodesic Hashing Alignment of RNA secondary structures including Pseudoknots | 2006-2010 | |
| Elad Donsky | CS,TAU | 2007 | ||
| Aviyah Peri | CS,TAU | 2008 | ||
| Itamar Banitt | CS,TAU | ParaDock – a flexible DNA rigid protein geometric complementarity based docking algorithm | 2009-2010 | |
| Daniel Zaidman | CS,TAU | Design of peptides that inhibit protein-protein interactions | 2011-2016 | |
| Naama Amir | CS,TAU | Modeling of large multi-molecular assemblies | 2013-2015 | |
| Misha Zabejansky | CS,TAU | 2014-2017 | ||
| Maria Gorodetski | CS,TAU | Knowledge Based Design of Protein Binding Peptides | 2016-2019 |
