| Name
|
Dept/University
|
Thesis Title
|
Period
|
Co-supervisor
|
| Yehezkel Lamdan
|
CS,NYU
|
Geometric Hashing
|
1987-1989
|
J.T. Schwartz
|
| Daniel Fischer
|
CS,TAU
|
Structural Matching Algorithms in Molecular Biology
|
1991-1994
|
R. Nussinov
|
| Raquel Norel
|
CS,TAU
|
Algorithms for Protein Docking
|
1992-1997
|
R. Nussinov
|
| Bilha (Billie) Sandak
|
CS,TAU
|
A Method for Biomolecular Structural Recognition allowing Conformational Flexibility
|
1992-1997
|
R. Nussinov
|
| Konstantin Kupeev
|
CS,TAU
|
A Structural Method for Shape Recognition
|
1993-1997
|
V. Brailovsky
|
| Hadar Benyamini
|
HumGen, MedFac,TAU
|
Applying Novel Geometric Algorithms in the Search for Amyloidogenic Mechanisms
|
1999-2004
|
R. Nussinov, MedFac
|
| Inbal Halperin - Landsberg
|
HumGen, MedFac,TAU
|
Improved Docking Schemes Utilizing Biological Information
|
2001-2005
|
R. Nussinov, MedFac
|
| Maxim Shatsky
|
CS,TAU
|
The Common Point Set Problem with Applications to Protein Structure Analysis
|
2001-2006
|
|
| Nurit Haspel
|
CS,TAU
|
Computational modeling and prediction of self assembling beta-sheet rich protein structures
|
2001-2006
|
R. Nussinov
|
| Yuval Inbar
|
CS,TAU
|
Structure Prediction of Multimolecular Protein Complexes
|
2003-2007
|
|
| Dina Schneidman-Duhovny
|
CS,TAU
|
Algorithms for Prediction of Molecular Interactions
|
2003-2008
|
|
| Oranit Dror
|
CS,TAU
|
Algorithms for Molecular Structure Analysis
|
2004-2009
|
|
| Alexandra Shulman-Peleg
|
CS,TAU
|
Algorithms for the Detection and Prediction of 3D Protein Binding Patterns and Interactions
|
2004-2009
|
|
| Dan Fishelovitch
|
Human Genetics, MedFac, TAU
|
In Silico prediction of the recognition between small molecules (ligands) and proteins for improved docking and drug design
|
2004-2009
|
Ruth Nussinov,MedFac, TAU
|
| Idit Buch
|
Human Genetics, MedFac, TAU
|
In Silico Design, Construction & Validation of Protein Nanostructures
|
2006-2011
|
Ruth Nussinov, MedFac, TAU
|
| Ilona Kifer
|
CS,TAU
|
Hierarchical-based Algorithms for Protein Structure Prediction
|
2005-2011
|
|
| Efrat Mashiach
|
CS,TAU
|
Flexible Molecular Docking
|
2008-2013
|
|
| Keren Lasker
|
TAU
|
Structure Determination of Macromolecular Assemblies by Data Integration
|
2008-2012
|
|
| Name
|
Dept/University
|
Thesis Title
|
Period
|
Co-supervisor
|
| Ephraim (Efi) Cohen
|
CS,BGU
|
Partial Matching of 3-D Objects in CAD/CAM Systems
|
1993-1995
|
D. Cohen, CS, BGU
|
| Vladimir Alesker
|
CS,TAU
|
Rapid Macromolecule Comparison by Geometric Secondary Structure Matching
|
1993-1995
|
|
| Dan Shappir
|
CS,TAU
|
Mapping of NMR interproton distance onto crystallographically determined protein structures by Computer Vision techniques
|
1992-1996
|
|
| Michael Kolko
|
CS,TAU
|
Recognition of Articulated 3D Objects from 2D Images
|
1993-1996
|
|
| Georgy Verbitsky
|
CS,TAU
|
Structural Comparison of Flexible Protein Domains
|
1994-1996
|
|
| Einat Azarya-Sprinzak
|
HumGen, MedFac,TAU
|
Mutations of Spatially Neighboring Residues in Structurally Conserved Environments
|
1994-1996
|
R. Nussinov,
|
| Maria Roiterstein-Rosen
|
CS,TAU
|
Protein Molecule Surface Comparison by Computer Vision Techniques
|
1994-1997
|
|
| Nathaniel Leibovitz
|
CS,NYU
|
Multiple Structural Alignment of Protein Ensembles
|
1997-1999
|
|
| Maxim Shatsky
|
CS,TAU
|
Flexible Alignment of Protein Molecules
|
1999-2001
|
|
| Tal Elkayam
|
HumGen, MedFac,TAU
|
Computational Studies of Protein Binding Sites
|
1998-2001
|
R. Nussinov
|
| Nurit Haspel
|
HumGen, MedFac,TAU
|
A Computational Study of Protein Folding Pathways
|
1999-2002
|
R. Nussinov
|
| Mark Sadov
|
CS,TAU
|
Flexible Matching of Drug Molecules
|
1996-2002
|
|
| Dina Schneidman-Duhovny
|
CS,TAU
|
PatchDock: A Method for Binding Site Detection and Unbound Docking of Rigid Molecules
|
2000-2003
|
|
| Adi Barzilay
|
HumGen, MedFac,TAU
|
Detection and Analysis of Folding-Function Inter-relationship in Proteins
|
2000-2003
|
R. Nussinov, MedFac
|
| Vladimir Polyak
|
CS,TAU
|
BUDDA: Backbone Unbound Docking Application
|
2000-2003
|
|
| Oranit Shem-Tov (Dror)
|
CS,TAU
|
MASS: A Method for Multiple Structural Alignment by Secondary Structures
|
2000-2003
|
|
| Yuval Inbar
|
CS,TAU
|
Prediction of Protein Structure by Combinatorial Docking
|
2001-2003
|
|
| Alexandra Shulman-Peleg
|
CS,TAU
|
Site-Engine: Functional Sites Structural Search Engine
|
2002-2004
|
|
| Assaf Oron
|
HumGen, MedFac,TAU
|
Predicting Electrostatic Steering and Encounter Complexes in Protein-Protein Association Processes
|
2002-2004
|
Nussinov, MedFac; N. Ben Tal, Life Sc.
|
| Shira Mintz
|
HumGen, MedFac,TAU
|
Computational Studies of Protein Binding Sites
|
2003-2005
|
R. Nussinov
|
| Gilad Weinreb
|
HumGen, MedFac,TAU
|
Templating the Building Blocks and a Secondary-Structure Guided superimposition tool
|
2003-2005
|
R. Nussinov
|
| Zipora Fligelman (Shaqed)
|
CS,TAU
|
FLEX MOL: A sequence Order Independent Algorithm for Matching Flexible Molecules by Geometric Hashing
|
1999-2005
|
|
| Keren Lasker
|
CS,TAU
|
EMatch: A Method for the Discovery of Protein Substructures in EM Maps
|
2003-2005
|
|
| Nelly Bluvshtein-Andrusier
|
CS,TAU
|
FireDock: Fast Interaction REfinement in Molecular Docking
|
2003-2006
|
R. Nussinov
|
| Ido Shapira
|
CS,TAU
|
SiteLight 2: An improved method for protein binding site prediction using phage display libraries
|
2003-2006
|
|
| Aviad Tsherniak
|
CS,TAU
|
ComaLoop: A Method for Protein Loop Modeling Using Contact Maps Similarity
|
2004-2006
|
|
| Efrat Mashiach
|
CS,TAU
|
(transferred to direct Ph.D. track)
|
2006-2008
|
|
| Mira Abraham-Cohen
|
CS,TAU
|
DARTS: DAtabase of RNA Tertiary Structure and HARP: geodesic Hashing Alignment of RNA secondary structures including Pseudoknots
|
2006-2010
|
|
| Elad Donsky
|
CS,TAU
|
|
2007
|
|
| Aviyah Peri
|
CS,TAU
|
|
2008
|
|
| Itamar Banitt
|
CS,TAU
|
ParaDock – a flexible DNA rigid protein geometric complementarity based docking algorithm
|
2009-2010
|
|
| Daniel Zaidman
|
CS,TAU
|
Design of peptides that inhibit protein-protein interactions
|
2011-2016
|
|
| Naama Amir
|
CS,TAU
|
Modeling of large multi-molecular assemblies
|
2013-2015
|
|
| Misha Zabejansky
|
CS,TAU
|
|
2014-2017
|
|
| Maria Gorodetski
|
CS,TAU
|
Knowledge Based Design of Protein Binding Peptides
|
2016-2019
|
|
