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SymmDock is an algorithm for prediction of complexes with Cn symmetry by geometry based docking. Given the structure of the asymmetric unit of the multimer complex, SymmDock predicts the structure of the entire complex. A Cn symmetry type complex is a complex with a rotational symmetry of order n about a symmetry axis. The rotation angle alpha is of 360/n degrees.

The input to the method is a 3D coordinate set of the asymmetric unit molecule and a number. The number n stands for the desired number of asymmetric units in the output complex. The output of the method is a list of complexes, that fulfill the cyclic symmetry constraints.

Beta 1.0 Version
Contact: ppdock@tau.ac.il