Bioinfo3D group developers home page

• The GAMB library Documentation. Locally generated. Library was developed by group members group's use. Available here are the HTML documentation pages generated from comments and documentation found in the library's source files. (small example)
• The DockingLib library Documentation. Locally generated. Library was developed by group members group's use. Available here are the HTML documentation pages generated from comments and documentation found in the library's source files. installed for the purposes of Bioinfo3D group development and research.
• The ligand_pharma library Documentation. Locally generated. Library was developed by group members group's use. Available here are the HTML documentation pages generated from comments and documentation found in the library's source files. installed for the purposes of Bioinfo3D group development and research.
• The Lib.General64 library Documentation. Locally generated. Library was developed by group members group's use. Available here are the HTML documentation pages generated from comments and documentation found in the library's source files. installed for the purposes of Bioinfo3D group development and research.
• Programs and Utilities installed for the purposes of Bioinfo3D group development and research.
• The STL documentation Locally available. Downloaded from the SGI site. This service extensively documents the Standard Template Library as defined by the C++ standard and a supplied with the egcs compiler.
• LEDA. Everything you ever wanted to know about graphs and geometry but didn't know who to ask ...
  Manual LEDA-5.2: LEDA documentation
  Manual LEDA-4.4: file:/home/silly6/mol/lib/LEDA-4.4-complete-i386-linux-redhat-7.0-g++-2.96/Manual/HTML/MANUAL.html
  Manual LEDA-3.7: LEDA documentation
  Rules to compile:
  • LEDA include files ('h' files) should come first.
  • Use prefix leda::SomeLEDAclass. For example leda::GRAPH< int,int >.
  • During linkage order of LEDA library files is important (why?). For simple graph algorithms: -lG -lL
• The VMD local help page This is a summary of all the vmd commands in a text format. For the full user guide download this file
• The FilterKit Documentation. A kit for creating filters for molecular biology applications using the GAMB library. Code and examples available on mol/lib/FilterKit.

• C++ Rules and Recommendations. Available Locally. Group members are encouraged to follow these guidelines.
• The C++ FAQ Lite. Many examples and frequently asked questions about C++ brought to you by the author of the C++ FAQ book Marshal Cline. Available locally.
• Available C++ Libraries FAQ (Web Index)
• 1997 C++ Public Review Document. The latest version available on line of the C++ standard draft document
• The Blitz++ Numerical Library Project Home Page A devoloping library showing exceptional performance by using state of the art C++ constructs. Should compile with the egcs compiler.
• The Cocoon Utilities Utilities used to extract code comments and class structure from C++ source files and create styled web pages out of them. This utility was used to create the GAMB++ documentation pages.
• CGAL in TAU Computational Geometry Algorithms Library pages.
• Cygnus Solutions - Technical Info Some pages on GNU C++ compilers and on egcs.

• Cetus Links An excellent site about object oriented design. Covers everything from basic programming languages to design paradigms, databases and componentware.

• GNU's Not Unix!. An official mirror site of the official GNU home page.
• GNU manuals and sources comfortably partitioned into subjects.
• GNU manuals (and a few others)

• The www.perl.com Home Page
• Perl Documentation Project

• The OPM Project Used as an object oriented fron to relational databases. Some projects in the bio-informatics field.
• Hughes Technologies Web Site Home of the miniSQL (mSQL) database server. A very popular database server in the web server community.
• PostgreSQL: Home An Object Relational database server. State of the art stuff for free.
• MySQL by TcX DataKonsult AB Another popular database in the unix/web server world.