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public: | |
enum | EXCLUSION_STATUS ; |
static const unsigned short | NUM_HEAVY_TYPES = 17; |
static const float | SIGMA_FACTOR = 0.5; |
static const float | T_0 = 298.15; |
static const REAL | Kb = 0.00198576; |
static const REAL | SIGMA[NUM_ATYPES]; |
static const REAL | DIELECTRIC = 332.05382; |
static const REAL | AVOGADRO = 6.0221367E+23L; |
static const REAL | JOULE_PER_CAL = 4.184; |
static const REAL | epsilon[NUM_ATYPES]; |
static const REAL | volume[NUM_ATYPES]; |
static const REAL | deltaG_ref[NUM_ATYPES]; |
static const REAL | deltaG_free[NUM_HEAVY_TYPES]; |
static const REAL | deltaH_ref[NUM_HEAVY_TYPES]; |
static const REAL | deltaCp_ref[NUM_HEAVY_TYPES]; |
static const REAL M_PI = | = (REAL)3.14159265359; |
static const REAL | SOLVATION_K; |
static const float ACEMatrix[ | 18][18]; |
static const float PDPMatrix[ | 22][22]; |
static unsigned short | getPDPType(RESIDUE_INDEX resType) |
protected: |
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enum EXCLUSION_STATUS { NOT_EXCLUDED = 0, EXCLUDED, PAIR1_4 };
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const unsigned short NUM_HEAVY_TYPES = 17;
static const unsigned short NUM_HEAVY_TYPES = 17;
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const float SIGMA_FACTOR = 0.5;
The factor used to determine when we have a steric clash
static const float SIGMA_FACTOR = 0.5;
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static const float T_0 = 298.15;
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The Boltzman constant
static const REAL Kb = 0.00198576;
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static const REAL SIGMA[NUM_ATYPES];
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const REAL DIELECTRIC = 332.05382;
Vacuum Dielectric constant (AVOGADRO*e0*e0)/(4*pi*vacuum permativity*1000*1e-10*4.1868) DIELECTRIC*q1*q2/r^2 (Kcal/mol)
static const REAL DIELECTRIC = 332.05382;
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const REAL AVOGADRO = 6.0221367E+23L;
Avogadro constant.
static const REAL AVOGADRO = 6.0221367E+23L; // 1 / mol
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const REAL JOULE_PER_CAL = 4.184;
Joule per calorie
static const REAL JOULE_PER_CAL = 4.184;
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const REAL epsilon[NUM_ATYPES];
van der Waals constants
static const REAL epsilon[NUM_ATYPES];
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const REAL volume[NUM_ATYPES];
Atom volumes
static const REAL volume[NUM_ATYPES];
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const REAL deltaG_ref[NUM_ATYPES];
Atom \Delta G^{ref}
static const REAL deltaG_ref[NUM_ATYPES];
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const REAL deltaG_free[NUM_HEAVY_TYPES];
Atom \Delta G^{free}
static const REAL deltaG_free[NUM_HEAVY_TYPES];
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const REAL deltaH_ref[NUM_HEAVY_TYPES];
Atom \Delta H^{ref}
static const REAL deltaH_ref[NUM_HEAVY_TYPES];
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const REAL deltaCp_ref[NUM_HEAVY_TYPES];
Atom \Delta Cp^{ref}
static const REAL deltaCp_ref[NUM_HEAVY_TYPES];
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const REAL M_PI = (REAL)3.14159265359;
static const REAL M_PI = (REAL)3.14159265359;
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static const REAL SOLVATION_K;// = 2.0 / (4.0 * M_PI * sqrt(M_PI));
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const float ACEMatrix[18][18];
static const float ACEMatrix[18][18];
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const float PDPMatrix[22][22];
static const float PDPMatrix[22][22];
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unsigned short getPDPType(RESIDUE_INDEX resType)
inline static unsigned short getPDPType(RESIDUE_INDEX resType)
Function is currently defined inline.
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public: | ||
---|---|---|
enum | EXCLUSION_STATUS ; | |
static const unsigned short | NUM_HEAVY_TYPES = 17; | |
static const float | SIGMA_FACTOR = 0.5; | |
static const float | T_0 = 298.15; | |
static const REAL | Kb = 0.00198576; | |
static const REAL | SIGMA[NUM_ATYPES]; | |
static const REAL | DIELECTRIC = 332.05382; | |
static const REAL | AVOGADRO = 6.0221367E+23L; | |
static const REAL | JOULE_PER_CAL = 4.184; | |
static const REAL | epsilon[NUM_ATYPES]; | |
static const REAL | volume[NUM_ATYPES]; | |
static const REAL | deltaG_ref[NUM_ATYPES]; | |
static const REAL | deltaG_free[NUM_HEAVY_TYPES]; | |
static const REAL | deltaH_ref[NUM_HEAVY_TYPES]; | |
static const REAL | deltaCp_ref[NUM_HEAVY_TYPES]; | |
static const REAL M_PI = | = (REAL)3.14159265359; | |
static const REAL | SOLVATION_K; | |
static const float ACEMatrix[ | 18][18]; | |
static const float PDPMatrix[ | 22][22]; | |
static unsigned short | getPDPType(RESIDUE_INDEX resType) | |
protected: |
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