Net

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Class Summary

class Net
{

public:
	Net(ChemSurface& surface);
ChemSurface&	getProteinSurface() ;
const SurfaceNet&	getSurfaceNet() const ;
void	getNodeCoordinates(const leda::node v, Vector3& coord) ;
void	getNodeNormal(const leda::node v, Vector3& norm) ;
ChemSurfacePoint*	getSurfacePoint(const leda::node v) ;
float	edgeDist(const leda::edge e) const ;
bool	isEdge(const int id1, const int id2) const;
float	geoDist(const int id1, const int id2) const ;
void	computeGeoDist(vector< bool>& nodes);
int	buildSurfaceNet();
void	output2PDB(ofstream& outputFile, bool type);
protected:
ChemSurface&	chemSurface_;
SurfaceNet	surfaceNet_;
vector<	leda::node> id2node;
	leda::node_map2< float> *DIST;

}; // Net

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KEYWORD

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AUTHORS

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CHANGES LOG

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GOALS

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USAGE

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Net(ChemSurface& surface);

  Net(ChemSurface& surface);

Function is currently defined inline.

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ChemSurface& getProteinSurface() ;

GROUP: member access functions //

  ChemSurface& getProteinSurface()                         
;

Function is currently defined inline.

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const SurfaceNet& getSurfaceNet() const ;

  const SurfaceNet& getSurfaceNet() const                        
;

Function is currently defined inline.

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void getNodeCoordinates(const leda::node v, Vector3& coord) ;

GROUP: node functions // get coordinate

  void getNodeCoordinates(const leda::node v, Vector3& coord)                                                         
;

Function is currently defined inline.

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void getNodeNormal(const leda::node v, Vector3& norm) ;

get normal

  void getNodeNormal(const leda::node v, Vector3& norm)                                                      
;

Function is currently defined inline.

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ChemSurfacePoint* getSurfacePoint(const leda::node v) ;

get surface point

  ChemSurfacePoint* getSurfacePoint(const leda::node v)                                              
;

Function is currently defined inline.

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float edgeDist(const leda::edge e) const ;

get euclidean distance, stored in each edge

  float edgeDist(const leda::edge e) const                               
;

Function is currently defined inline.

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bool isEdge(const int id1, const int id2) const;

check if there is an edge between two nodes

  bool isEdge(const int id1, const int id2) const;

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float geoDist(const int id1, const int id2) const ;

geodesical distance

  float geoDist(const int id1, const int id2) const                                                                                                                                                                                                                                                               
;

Function is currently defined inline.

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void computeGeoDist(vector< bool>& nodes);

GROUP: methods // compute geodesical distances for a set of nodes

  void computeGeoDist(vector< bool>& nodes);

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int buildSurfaceNet();

build surface graph

  int buildSurfaceNet();

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void output2PDB(ofstream& outputFile, bool type);

output graph to pdb

  void output2PDB(ofstream& outputFile, bool type);

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ChemSurface& chemSurface_;

  ChemSurface& chemSurface_;

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SurfaceNet surfaceNet_;

  SurfaceNet surfaceNet_;

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vector< leda::node> id2node;

  vector< leda::node> id2node;

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leda::node_map2< float> *DIST;

  leda::node_map2< float> *DIST;

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All Members

public:
ChemSurface&	getProteinSurface() ;
const SurfaceNet&	getSurfaceNet() const ;
void	getNodeCoordinates(const leda::node v, Vector3& coord) ;
void	getNodeNormal(const leda::node v, Vector3& norm) ;
ChemSurfacePoint*	getSurfacePoint(const leda::node v) ;
float	edgeDist(const leda::edge e) const ;
bool	isEdge(const int id1, const int id2) const;
float	geoDist(const int id1, const int id2) const ;
void	computeGeoDist(vector< bool>& nodes);
int	buildSurfaceNet();
void	output2PDB(ofstream& outputFile, bool type);
protected:
ChemSurface&	chemSurface_;
SurfaceNet	surfaceNet_;
vector<	leda::node> id2node;
	leda::node_map2< float> *DIST;

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Ancestors

Class does not inherit from any other class.

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Descendants

Class is not inherited by any others.

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Generated from source by the Cocoon utilities on Mon Dec 21 12:00:24 2009 .

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