TwoPointBase

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class Signature ;

  class Signature {
  public:
    ////
    Signature() {}
    ////
    Signature(float geo_dist, float dist, float a, float b, float t) {
      sig_[0]=geo_dist; sig_[1]=dist;
      sig_[2]=a; sig_[3]=b; sig_[4]=t;
    }
////
    const float& operator[](const unsigned short coord) const{
      return sig_[coord];
    }
////
    friend ostream& operator<<(ostream& s, const Signature& sign) {
      return s << "Sign = " << sign.sig_[0] << ' ' << sign.sig_[1] << ' '
	       << sign.sig_[2] << ' ' << sign.sig_[3] << ' ' << sign.sig_[4];
    }
  private:
    float sig_[5]; //geoDist, dist, alpha, beta, omega
  };

Function is currently defined inline.

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struct BaseParams ;

  struct BaseParams {
////
    static bool add(const string str) {
      if(sscanf(str.c_str(), "%f %f %hd", &min_base_dist, &max_base_dist, &match_type) != 3)
	return false;
      min_base_dist = min_base_dist*min_base_dist;
      max_base_dist = max_base_dist*max_base_dist;
      return true;
    }
////
    static float min_base_dist;
////
    static float max_base_dist;
////
    static short match_type;
  };

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TwoPointBase(const ChemSurfacePoint* a, const ChemSurfacePoint* b, float geoDist, bool invertNormals);

  TwoPointBase(const ChemSurfacePoint* a, const ChemSurfacePoint* b, float geoDist, bool invertNormals);

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bool isMatchingBase(const TwoPointBase* base) const;

  bool isMatchingBase(const TwoPointBase* base) const;

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bool isBasePoint(const ChemSurfacePoint* point) const ;

  bool isBasePoint(const ChemSurfacePoint* point) const                                     
;

Function is currently defined inline.

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bool isValidBase(const ChemSurfacePoint* a, const ChemSurfacePoint* b) ;

  static bool isValidBase(const ChemSurfacePoint* a, const ChemSurfacePoint* b)                                                                                                        ;

Function is currently defined inline.

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const Signature& getSignature() const ;

  const Signature& getSignature() const                  
;

Function is currently defined inline.

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const RigidTrans3& getTrans() const ;

  const RigidTrans3& getTrans() const                   
;

Function is currently defined inline.

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Vector3 getCoordinatesInBase(const Vector3& point) const ;

  Vector3 getCoordinatesInBase(const Vector3& point) const                           
;

Function is currently defined inline.

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int getFirstId() const ;

  int getFirstId() const                        
;

Function is currently defined inline.

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int getSecondId() const ;

  int getSecondId() const                        
;

Function is currently defined inline.

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unsigned int getBaseId() const ;

  unsigned int getBaseId() const                    
;

Function is currently defined inline.

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friend ostream& operator<<(ostream& s, const TwoPointBase& base);

  friend ostream& operator<<(ostream& s, const TwoPointBase& base);

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const ChemSurfacePoint *p1,*p2;

  const ChemSurfacePoint *p1,*p2;

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Signature sign_;

  Signature sign_;

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RigidTrans3 trans_;

  RigidTrans3 trans_;

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unsigned int baseId_;

  unsigned int baseId_;

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unsigned int baseCounter;

  static unsigned int baseCounter;

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