Sheet

This class defines a beta sheet that is constructed from beta strands

Quick Index

KEWORDS

Class Summary

class Sheet
: public SmallArray< Strand>

{

public:
	Sheet();
	Sheet(const unsigned short size, const char sheet_id[]);
explicit	Sheet(const char* const PDBrec);
bool	isCurrSheet(const char sheetId[]) const;
bool	add(const char* const PDBrec);
Sheet&	operator=(const Sheet& rhs);
friend ostream&	operator<<(ostream& s, const Sheet& bs);
protected:

}; // Sheet

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KEWORDS

beta, sheet, starnd, parallelism, connection, nytrogen group, hydrogen bonding

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AUTHORS

Zipi Fligelamn (zipo@math.tau.ac.il)

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CHANGES LOG

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GOALS

The goals of this class is to define the secondary structure knows as beta sheet. Taking all the appropriate information from the the strand lines in the pdb file. It builds the sheet strand by strand (aka. line by line). It also performs all kind of sanity checks like not entering a strand with the index number 5 when we inly have 4 strands in the helix.

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USAGE

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Sheet();

Empty constructor

    Sheet();

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Sheet(const unsigned short size, const char sheet_id[]);

Regular constructor need to know the number of strands the sheet will hold there is no possibility to enter more strands then this number

    Sheet(const unsigned short size, const char sheet_id[]);

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explicit Sheet(const char* const PDBrec);

Strarting the sheet from any strand PDB line though it is highly recommended to start it from the first line.

    explicit Sheet(const char* const PDBrec);

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bool isCurrSheet(const char sheetId[]) const;

Checking if a certain code belongs to the current sheet code

    bool isCurrSheet(const char sheetId[]) const;

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bool add(const char* const PDBrec);

/ Adding strands with all the appropriate sanity checks.

    bool add(const char* const PDBrec);

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Sheet& operator=(const Sheet& rhs);

Assigment Operator

    Sheet& operator=(const Sheet& rhs);

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friend ostream& operator<<(ostream& s, const Sheet& bs);

streaming to output in the following format: SHEET list of all the strands in the strand fromat

    friend ostream& operator<<(ostream& s, const Sheet& bs);

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All Members

public:

	// STL compliance defintions
typedef DataT*	iterator;
typedef const DataT*	const_iterator;
typedef DataT&	reference;
typedef const DataT&	const_reference;

	// Constructors/Destructor
explicit	SmallArray(unsigned short size);
bool	push_back(const DataT& elem);

	// OPERATORS
SmallArray< DataT>&	operator=(const SmallArray< DataT>& sa);
reference	operator[](unsigned short index);
const_reference	operator[](unsigned short index) const;
iterator	begin();
const_iterator	begin() const;
iterator	end();
const_iterator	end() const;
unsigned short	size() const ;
unsigned short	max_size() const ;
unsigned short	capacity() const ;
bool	empty() ;
bool	full() ;
explicit	Sheet(const char* const PDBrec);
bool	isCurrSheet(const char sheetId[]) const;
bool	add(const char* const PDBrec);
Sheet&	operator=(const Sheet& rhs);
friend ostream&	operator<<(ostream& s, const Sheet& bs);
protected:

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Ancestors

Inheritance chain for Sheet:

SmallArray

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Descendants

Class is not inherited by any others.

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