DynProg2Dw

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Class Summary

class DynProg2Dw
: public DynProg2D
{
public:
DynProg2Dw(int i_iN,int i_iM, float i_fOpenGapPenalty );
~DynProg2Dw() ;
void setWeight(const int i,const int j,const float w) ;
template< class TWeightFunc> void getGlobalAlignmentW(const TWeightFunc& wf, vector<pair<int,int> >& o_vPair, float& o_fMaxScore);
protected:
}; // DynProg2Dw

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KEYWORD

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AUTHORS

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CHANGES LOG

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GOALS

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USAGE

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DynProg2Dw(int i_iN,int i_iM, float i_fOpenGapPenalty );

  DynProg2Dw(int i_iN,int i_iM, float i_fOpenGapPenalty=-11);

Function is currently defined inline.


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~DynProg2Dw() ;

  ~DynProg2Dw()                           
;

Function is currently defined inline.


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void setWeight(const int i,const int j,const float w) ;

  inline void setWeight(const int i,const int j,const float w)                                         
;

Function is currently defined inline.


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template< class TWeightFunc> void getGlobalAlignmentW(const TWeightFunc& wf, vector<pair<int,int> >& o_vPair, float& o_fMaxScore);

  template< class TWeightFunc>
  void getGlobalAlignmentW(const TWeightFunc& wf,
			   vector<pair<int,int> >& o_vPair,
			   float& o_fMaxScore);

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All Members

public:
void setRelation(int i_iI,int i_iJ,float i_fRelation) ;
void setRelationGAPi(int i_iI,float i_fRelation) ;
void setRelationGAPj(int i_iJ,float i_fRelation) ;
void getGlobalAlignmentGenGap(vector< pair< int,int> >& o_vPair, float& o_fMaxScore, bool bEndsFree );
static const float NOT_MATCH;
const float m_fOpenGapPenalty;
const float m_fGapPenalty;
void setWeight(const int i,const int j,const float w) ;
template< class TWeightFunc> void getGlobalAlignmentW(const TWeightFunc& wf, vector<pair<int,int> >& o_vPair, float& o_fMaxScore);
protected:
enum DIRECTION ;
struct MElement
float* m_fRelationMtrx;
MElement* m_fScoreMtrx;
int m_iN,m_iM;
float *m_fRelationGAPi;
float *m_fRelationGAPj;

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Ancestors

Inheritance chain for DynProg2Dw:

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Descendants

Class is not inherited by any others.

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Generated from source by the Cocoon utilities on Tue Jan 5 18:47:29 2010 .

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