ProteinSequence

Holds a protein sequence.

[ Lib_General64 | Source | Keywords | Summary | Ancestors | All Members | Descendants ]

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AUTHORS
CHANGES LOG
GOALS
USAGE

Class Summary

class ProteinSequence
: public vector< Atom>
{
public:
ProteinSequence(const char* desc,const char* filename);
ProteinSequence(const AtomMolecule i_mol)
ProteinSequence(const string& seq,const char* desc,const char* filename);
static vector< ProteinSequence> readFASTA(istream& i_stream,const char * i_file);
static vector< ProteinSequence> readFASTA(const char * i_file) ;
static vector< ProteinSequence> readPIR(istream& i_stream,const char * i_file);
static vector< ProteinSequence> readPIR(const char * i_file) ;
string getFileName()const ;
string getDesc()const ;
string getMolType()const ;
void setMolType(const string type) ;
friend ostream& operator<<(ostream& s, const ProteinSequence& ps);
protected:
}; // ProteinSequence

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AUTHORS

Maxim Shatsky (maxshats@tau.ac.il)

Copyright: SAMBA group, Tel-Aviv Univ. Israel, 2003.

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CHANGES LOG

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GOALS

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USAGE

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ProteinSequence(const char* desc,const char* filename);

  ProteinSequence(const char* desc,const char* filename);

Function is currently defined inline.


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ProteinSequence(const AtomMolecule i_mol)

  ProteinSequence(const AtomMolecule i_mol)

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ProteinSequence(const string& seq,const char* desc,const char* filename);

  ProteinSequence(const string& seq,const char* desc,const char* filename);

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vector< ProteinSequence> readFASTA(istream& i_stream,const char * i_file);

  static vector< ProteinSequence> readFASTA(istream& i_stream,const char * i_file);

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vector< ProteinSequence> readFASTA(const char * i_file) ;

  static vector< ProteinSequence> readFASTA(const char * i_file)                              ;

Function is currently defined inline.


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vector< ProteinSequence> readPIR(istream& i_stream,const char * i_file);

  static vector< ProteinSequence> readPIR(istream& i_stream,const char * i_file);

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vector< ProteinSequence> readPIR(const char * i_file) ;

  static vector< ProteinSequence> readPIR(const char * i_file)                              ;

Function is currently defined inline.


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string getFileName()const ;

  string getFileName()const                    
;

Function is currently defined inline.


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string getDesc()const ;

  string getDesc()const                
;

Function is currently defined inline.


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string getMolType()const ;

  string getMolType()const                    
;

Function is currently defined inline.


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void setMolType(const string type) ;

  void setMolType(const string type)                    
;

Function is currently defined inline.


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friend ostream& operator<<(ostream& s, const ProteinSequence& ps);

  friend ostream& operator<<(ostream& s, const ProteinSequence& ps);

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All Members

public:
static vector< ProteinSequence> readFASTA(istream& i_stream,const char * i_file);
static vector< ProteinSequence> readFASTA(const char * i_file) ;
static vector< ProteinSequence> readPIR(istream& i_stream,const char * i_file);
static vector< ProteinSequence> readPIR(const char * i_file) ;
string getFileName()const ;
string getDesc()const ;
string getMolType()const ;
void setMolType(const string type) ;
friend ostream& operator<<(ostream& s, const ProteinSequence& ps);
protected:

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Ancestors

Inheritance chain for ProteinSequence:

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Descendants

Class is not inherited by any others.

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Generated from source by the Cocoon utilities on Tue Jan 5 18:47:30 2010 .

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