SequenceProfile

[ Lib_General64 | Source | Keywords | Summary | Ancestors | All Members | Descendants ]

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Class Summary

class SequenceProfile
{
public:
static const int GAP=-1;
SequenceProfile();
SequenceProfile(const TMolecule* mol);
SequenceProfile(const vector< TColumn>& i_vCol, const vector< const TMolecule*>& i_vMol);
int getMolNum()const ;
float getScore()const ;
SequenceProfile< TMolecule,TSelector,TScoreMatrix> joinProfiles(const SequenceProfile< TMolecule,TSelector,TScoreMatrix>&)const;
friend ostream& operator<<(ostream& s, const SequenceProfile< TTMolecule,TTSelector,TTScoreMatrix>& sp);
void printConservation(ostream& s)const;
void printConservation(ostream& s,int i_iMol)const;
void printMolNames(ostream& s)const;
void printPDBwithTemp(const string& i_filename,int i_iMol)const;
hash_map< int,float> getResidueToScoreMap(int i_iMol)const;
void reorder(const vector< const TMolecule*>& vMol);
protected:
}; // SequenceProfile

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KEYWORD

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AUTHORS

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CHANGES LOG

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GOALS

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USAGE

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const int GAP=-1;

  static const int GAP=-1;//=-1(){m_iLength=0;}

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SequenceProfile();

  SequenceProfile();

Function is currently defined inline.


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SequenceProfile(const TMolecule* mol);

  SequenceProfile(const TMolecule* mol);

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SequenceProfile(const vector< TColumn>& i_vCol, const vector< const TMolecule*>& i_vMol);

  SequenceProfile(const vector< TColumn>& i_vCol,
		  const vector< const TMolecule*>& i_vMol);

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int getMolNum()const ;

  int getMolNum()const                       
;

Function is currently defined inline.


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float getScore()const ;

  float getScore()const                  
;

Function is currently defined inline.


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SequenceProfile< TMolecule,TSelector,TScoreMatrix> joinProfiles(const SequenceProfile< TMolecule,TSelector,TScoreMatrix>&)const;

  SequenceProfile< TMolecule,TSelector,TScoreMatrix> joinProfiles(const SequenceProfile< TMolecule,TSelector,TScoreMatrix>&)const;

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friend ostream& operator<<(ostream& s, const SequenceProfile< TTMolecule,TTSelector,TTScoreMatrix>& sp);

  friend ostream& operator<<(ostream& s, const SequenceProfile< TTMolecule,TTSelector,TTScoreMatrix>& sp);

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void printConservation(ostream& s)const;

  void printConservation(ostream& s)const;

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void printConservation(ostream& s,int i_iMol)const;

  void printConservation(ostream& s,int i_iMol)const;

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void printMolNames(ostream& s)const;

  void printMolNames(ostream& s)const;

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void printPDBwithTemp(const string& i_filename,int i_iMol)const;

  void printPDBwithTemp(const string& i_filename,int i_iMol)const;

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hash_map< int,float> getResidueToScoreMap(int i_iMol)const;

  hash_map< int,float> getResidueToScoreMap(int i_iMol)const;

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void reorder(const vector< const TMolecule*>& vMol);

  void reorder(const vector< const TMolecule*>& vMol);

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All Members

public:
static const int GAP=-1;
int getMolNum()const ;
float getScore()const ;
SequenceProfile< TMolecule,TSelector,TScoreMatrix> joinProfiles(const SequenceProfile< TMolecule,TSelector,TScoreMatrix>&)const;
friend ostream& operator<<(ostream& s, const SequenceProfile< TTMolecule,TTSelector,TTScoreMatrix>& sp);
void printConservation(ostream& s)const;
void printConservation(ostream& s,int i_iMol)const;
void printMolNames(ostream& s)const;
void printPDBwithTemp(const string& i_filename,int i_iMol)const;
hash_map< int,float> getResidueToScoreMap(int i_iMol)const;
void reorder(const vector< const TMolecule*>& vMol);
protected:

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Ancestors

Class does not inherit from any other class.

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Descendants

Class is not inherited by any others.

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Generated from source by the Cocoon utilities on Tue Jan 5 18:47:31 2010 .

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