StructureBasedMSA

[ Lib_General64 | Source | Keywords | Summary | Ancestors | All Members | Descendants ]

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Class Summary

class StructureBasedMSA
{

public:
vector< const TMolecule*>	getMols() ;
	StructureBasedMSA() ;
	StructureBasedMSA(const vector< const TMolecule*>& vMol);
	StructureBasedMSA(const TSequenceProfile& seqProfile,const vector< const TMolecule*>& vMol)
TSequenceProfile	getProfile() ;
friend ostream&	operator<<(ostream& s, const StructureBasedMSA& msa) ;
void	printConservation_txt(const string i_fname)const ;
void	printClustalXformat(const string i_fname)const ;
void	printPIRformat(const string i_fname)const ;
void	scoreToBfactor(const string i_fname, int i_iMol, const TIMolecule& i_mol)const
protected:

}; // StructureBasedMSA

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KEYWORD

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AUTHORS

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CHANGES LOG

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GOALS

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USAGE

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vector< const TMolecule*> getMols() ;

  vector< const TMolecule*> getMols()                
;

Function is currently defined inline.

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StructureBasedMSA() ;

  StructureBasedMSA()  
;

Function is currently defined inline.

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StructureBasedMSA(const vector< const TMolecule*>& vMol);

  StructureBasedMSA(const vector< const TMolecule*>& vMol);

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StructureBasedMSA(const TSequenceProfile& seqProfile,const vector< const TMolecule*>& vMol)

  StructureBasedMSA(const TSequenceProfile& seqProfile,const vector< const TMolecule*>& vMol)

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TSequenceProfile getProfile() ;

  TSequenceProfile getProfile()                      
;

Function is currently defined inline.

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friend ostream& operator<<(ostream& s, const StructureBasedMSA& msa) ;

  friend ostream& operator<<(ostream& s, const StructureBasedMSA& msa)                                             ;

Function is currently defined inline.

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void printConservation_txt(const string i_fname)const ;

  void printConservation_txt(const string i_fname)const                                                        ;

Function is currently defined inline.

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void printClustalXformat(const string i_fname)const ;

  void printClustalXformat(const string i_fname)const                                                                                     
;

Function is currently defined inline.

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void printPIRformat(const string i_fname)const ;

  void printPIRformat(const string i_fname)const                                                                                
;

Function is currently defined inline.

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void scoreToBfactor(const string i_fname, int i_iMol, const TIMolecule& i_mol)const

  void scoreToBfactor(const string i_fname,		      
		      int i_iMol,
		      const TIMolecule& i_mol)const

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All Members

public:
vector< const TMolecule*>	getMols() ;
TSequenceProfile	getProfile() ;
friend ostream&	operator<<(ostream& s, const StructureBasedMSA& msa) ;
void	printConservation_txt(const string i_fname)const ;
void	printClustalXformat(const string i_fname)const ;
void	printPIRformat(const string i_fname)const ;
void	scoreToBfactor(const string i_fname, int i_iMol, const TIMolecule& i_mol)const
protected:

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Ancestors

Class does not inherit from any other class.

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Descendants

Class is not inherited by any others.

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