Molecular Docking Algorithm Based on Shape Complementarity Principles
[About PatchDock] [Web Server] [Download] [Help] [FAQ] [References]

PatchDock Web Server

The web server runs PatchDock algorithm with default values.

Input Fields

Optional Input Fields
Advanced Input Fields
The ouput of PatchDock is a list of candidate complexes between user specified receptor and ligand molecule. The list is presented to the user in the format of a table, each table line represents one candidate complex.

Table Format:

Download PDB files with complexes:

In addition, the server provides an option to download up to 100 top ranking candidate complexes in the PDB format in one zipped file. The user may specify the number of solutions and the server will prepare a Zip file for download.

  1. Duhovny D, Nussinov R, Wolfson HJ. Efficient Unbound Docking of Rigid Molecules. In Gusfield et al., Ed. Proceedings of the 2'nd Workshop on Algorithms in Bioinformatics(WABI) Rome, Italy, Lecture Notes in Computer Science 2452, pp. 185-200, Springer Verlag, 2002 [ PDF file ]
  2. Zhang C, Vasmatzis G, Cornette JL, DeLisi C. Determination of atomic desolvation energies from the structures of crystallized proteins. J Mol Biol. 267(3):707-26, 1997

Beta 1.3 Version