Abstract: The database details the interactions of extruded,
unpaired RNA nucleotide bases. It presents and classifies the protein
binding pockets that accommodate them. It allows the recognition of
similar protein binding patters involved in interactions with
different RNA molecules. Given an unbound protein structure it allows
the prediction of its nucleotide and dinucleotide binding sites.
There are several options to view the context of RsiteDB:
Reference: Shulman-Peleg A, Shatsky M, Nussinov R. and
Wolfson H. J. (2008) Prediction of interacting single-stranded RNA
bases by protein binding patterns, Journal of Molecular
Biology, Vol 379, pp 299-316. Email:shulmana@tau.ac.il,
ppdock@tau.ac.il
