[Home][Help][About RsiteDB][RsiteDB Classification]

Abstract: The database details the interactions of extruded, unpaired RNA nucleotide bases. It presents and classifies the protein binding pockets that accommodate them. It allows the recognition of similar protein binding patters involved in interactions with different RNA molecules. Given an unbound protein structure it allows the prediction of its nucleotide and dinucleotide binding sites.

There are several options to view the context of RsiteDB:
View all clusters of dinucleotide binding sites
View all clusters of single nucleotide binding sites
Download parseable database files

Reference: Shulman-Peleg A, Shatsky M, Nussinov R. and Wolfson H. J. (2008) Prediction of interacting single-stranded RNA bases by protein binding patterns, Journal of Molecular Biology, Vol 379, pp 299-316.
Email:shulmana@tau.ac.il, ppdock@tau.ac.il