Nucleotide

A container that stores all NucleicAcidAtoms of a nucleotide

[ GAMB | Source | Keywords | Summary | Ancestors | All Members | Descendants ]

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AUTHORS
CHANGES LOG
USAGE
END

Class Summary

class Nucleotide :
public vector<NucleicAcidAtom>
{
public:
// Iterators
class BaseIterator ;
void operator++()
const NucleicAcidAtom& operator*() ;
bool isDone() ;
protected:
}; // Nucleotide

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AUTHORS

Oranit Dror (mailto: oranit@post.tau.ac.il)

Copyright: SAMBA group, Tel-Aviv Univ. Israel, 2004.

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CHANGES LOG

OVERVIEW TEXT

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USAGE

      Molecule<NucleicAcidAtom> rna;
      ifstream rnaFile("rna.pdb");
      rna.readPDBfile(rnaFile);

      vector<Nucleotide> rna_nc = Nucleotide::parsePDB(rna);

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END

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class BaseIterator ;

  class BaseIterator {
  public:
    ////
    BaseIterator(const Nucleotide* nucleotide_) : 
      nucleotide(nucleotide_), nucleotideIter(nucleotide_->begin()) {
      if (!nucleotideIter->isBaseAtom()) {
	operator++();
      }
    }

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void operator++()

Proceede to the next base atom of the nucleotide 

    void operator++()

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const NucleicAcidAtom& operator*() ;

Returns the current base atom (Dereference) 

    const NucleicAcidAtom& operator*()                                              
;

Function is currently defined inline.


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bool isDone() ;

Returns true if the iterator points beyond the last base atom of the nucleotide 

    bool isDone()                                                                  
;

Function is currently defined inline.


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All Members

public:
// Iterators
class BaseIterator ;
void operator++()
const NucleicAcidAtom& operator*() ;
bool isDone() ;
protected:

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Ancestors

Inheritance chain for Nucleotide:

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Descendants

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Generated from source by the Cocoon utilities on Sun Nov 15 13:35:26 2009 .

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